JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIBAR1_chr8_93695550_93736527	0/0	g0139	1	0	0	1	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0140	1	0	0	1	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0141	1	0	0	1	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0142	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0143	1	0	0	1	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0144	1	0	1	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0145	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0146	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0147	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0148	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0149	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0150	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0151	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0152	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0153	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0154	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0155	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0156	1	0	0	0	0	1	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0157	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0158	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0159	1	1	0	0	0	0	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0160	1	0	0	0	0	1	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	g0161	1	0	0	1	0	0	CIBAR1	chr8	93695550	93736527
CIBAR2_chr16_85093358_85117472	0/0	g0001	36	0	4	29	1	2	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0002	24	0	0	24	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0003	12	0	2	8	0	2	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0004	12	0	2	8	0	2	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0005	11	0	3	7	0	1	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0006	10	0	5	5	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0007	8	0	0	8	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0008	7	0	2	4	1	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0009	6	0	0	6	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0010	6	0	0	6	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0011	6	0	0	3	3	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0012	5	0	0	5	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0013	5	0	0	5	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0014	5	0	4	0	1	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0015	5	0	0	5	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0016	5	0	1	0	1	3	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	1/0	g0017	4	0	0	3	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0018	4	0	3	1	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0019	3	3	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0020	3	0	1	2	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0021	3	0	0	1	0	2	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0022	3	0	3	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0023	3	2	1	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0024	3	0	0	0	0	3	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0025	3	0	2	0	0	1	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0026	3	0	1	0	0	2	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0027	2	2	0	0	0	0	CIBAR2	chr16	85093358	85117472