JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIBAR2_chr16_85093358_85117472	0/0	g0228	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0229	1	0	0	0	1	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0230	1	0	0	0	0	1	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0231	1	0	1	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0232	1	0	0	0	0	1	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0233	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0234	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0235	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0236	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0237	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0238	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0239	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0240	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0241	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0242	1	0	1	0	0	0	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	g0243	1	1	0	0	0	0	CIBAR2	chr16	85093358	85117472
CIC_chr19_42264252_42300796	0/0	g0001	37	1	14	14	3	5	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	1/1	g0002	21	7	10	1	0	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0003	10	0	4	5	0	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0004	8	0	0	6	0	2	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0005	7	0	4	1	1	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0006	5	0	4	1	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0007	5	5	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0008	4	0	0	1	0	3	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0009	3	3	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0010	2	2	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0011	2	2	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0012	2	2	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0013	2	2	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0014	2	0	0	2	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0015	2	0	0	0	0	2	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0016	2	0	1	1	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0017	2	2	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0018	2	2	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0019	2	0	2	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0020	1	0	1	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0021	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0022	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0023	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0024	1	0	0	0	0	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0025	1	0	1	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0026	1	0	0	0	1	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0027	1	0	0	1	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0028	1	0	0	0	0	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0029	1	0	1	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0030	1	0	0	0	1	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0031	1	0	0	1	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0032	1	0	0	0	0	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0033	1	0	0	0	0	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0034	1	1	0	0	0	0	CIC	chr19	42264252	42300796