JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIC_chr19_42264252_42300796	0/0	g0085	1	0	1	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0086	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0087	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0088	1	0	1	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0089	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0090	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0091	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0092	1	0	0	0	0	1	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0093	1	0	1	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0094	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	g0095	1	1	0	0	0	0	CIC	chr19	42264252	42300796
CIDEA_chr18_12249361_12282595	0/0	g0001	6	0	0	6	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0002	6	0	0	6	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0003	5	0	5	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0004	4	0	0	4	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0005	2	0	1	0	1	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0006	2	2	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0007	2	0	2	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0008	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0009	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0010	2	2	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0011	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0012	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0013	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0014	2	0	0	0	0	2	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0015	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0016	2	0	2	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0017	2	0	2	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0018	2	0	1	0	0	1	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0019	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0020	2	0	0	1	0	1	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0021	2	0	0	0	2	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0022	2	0	0	2	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0023	2	2	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0024	2	2	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0025	2	2	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0026	1	0	0	0	0	1	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0027	1	0	0	1	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0028	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0029	1	0	1	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0030	1	0	1	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0031	1	0	0	1	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0032	1	0	1	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0033	1	0	1	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0034	1	0	0	0	1	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0035	1	0	0	1	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0036	1	0	0	1	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0037	1	0	0	1	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0038	1	0	1	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0039	1	0	0	0	0	1	CIDEA	chr18	12249361	12282595