JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIDEA_chr18_12249361_12282595	0/0	g0390	1	0	0	0	0	1	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0391	1	0	0	0	1	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0392	1	0	0	0	1	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0393	1	0	0	0	1	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0394	1	0	0	0	0	1	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0395	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0396	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0397	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0398	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0399	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0400	1	0	1	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0401	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0402	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0403	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0404	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0405	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0406	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0407	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0408	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0409	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	g0410	1	1	0	0	0	0	CIDEA	chr18	12249361	12282595
CIDEB_chr14_24300187_24312977	0/0	g0001	156	52	27	48	7	22	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/1	g0002	123	6	8	89	3	16	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0003	45	14	22	0	4	5	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	1/0	g0004	34	10	2	21	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0005	12	0	3	7	0	2	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0006	8	0	0	8	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0007	6	0	1	5	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0008	5	0	0	5	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0009	4	4	0	0	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0010	3	3	0	0	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0011	2	0	0	2	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0012	1	1	0	0	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0013	1	0	0	0	0	1	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0014	1	0	0	0	0	1	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0015	1	0	1	0	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0016	1	0	1	0	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0017	1	0	0	1	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0018	1	0	0	1	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0019	1	0	0	1	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0020	1	0	0	0	1	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0021	1	0	1	0	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0022	1	0	0	0	1	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0023	1	0	0	1	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0024	1	0	0	1	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0025	1	0	0	1	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0026	1	0	0	1	0	0	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	g0027	1	0	0	0	0	1	CIDEB	chr14	24300187	24312977
CIDEC_chr3_9861714_9885253	0/0	g0001	34	0	4	28	0	2	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	g0002	25	8	2	15	0	0	CIDEC	chr3	9861714	9885253