JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIITA_chr16_10872202_10941394	0/0	g0347	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0348	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0349	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0350	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0351	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0352	1	0	1	0	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0353	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0354	1	0	1	0	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0355	1	0	0	0	1	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0356	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0357	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0358	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0359	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0360	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0361	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0362	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0363	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0364	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0365	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0366	1	0	0	0	0	1	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0367	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0368	1	0	1	0	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0369	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0370	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0371	1	0	1	0	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0372	1	0	0	1	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0373	1	1	0	0	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0374	1	1	0	0	0	0	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	g0375	1	0	1	0	0	0	CIITA	chr16	10872202	10941394
CILK1_chr6_52996303_53066824	0/0	g0001	10	1	3	5	1	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0002	8	0	2	6	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0003	8	2	3	0	1	2	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0004	6	3	1	1	0	1	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0005	6	0	1	4	0	1	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0006	6	0	0	6	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0007	5	4	1	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0008	4	0	0	4	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0009	4	3	1	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0010	4	4	0	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0011	3	1	2	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0012	2	2	0	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0013	2	2	0	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0014	2	2	0	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0015	2	0	1	0	1	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0016	2	0	0	0	0	2	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0017	2	1	0	1	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0018	2	0	0	1	0	1	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0019	2	0	0	2	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0020	2	0	0	2	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0021	2	0	0	2	0	0	CILK1	chr6	52996303	53066824