JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CILK1_chr6_52996303_53066824	0/0	g0172	1	1	0	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0173	1	1	0	0	0	0	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	g0174	1	0	0	1	0	0	CILK1	chr6	52996303	53066824
CILP2_chr19_19533265_19551659	1/1	g0001	141	29	29	56	10	15	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0002	44	8	10	22	0	4	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0003	28	14	4	5	0	5	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0004	22	5	3	11	2	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0005	21	4	9	0	3	5	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0006	8	2	0	4	0	2	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0007	8	6	2	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0008	7	2	0	0	0	5	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0009	6	0	0	5	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0010	6	0	0	5	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0011	4	4	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0012	4	2	0	1	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0013	4	0	1	3	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0014	4	0	1	3	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0015	3	3	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0016	3	3	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0017	3	3	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0018	3	0	0	0	2	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0019	2	2	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0020	2	0	0	1	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0021	2	0	0	2	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0022	2	0	2	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0023	2	0	0	0	0	2	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0024	1	1	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0025	1	1	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0026	1	0	1	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0027	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0028	1	1	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0029	1	1	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0030	1	1	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0031	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0032	1	0	0	0	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0033	1	0	0	0	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0034	1	0	0	0	1	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0035	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0036	1	0	0	0	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0037	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0038	1	1	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0039	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0040	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0041	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0042	1	0	0	0	0	1	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0043	1	1	0	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0044	1	0	1	0	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0045	1	0	0	1	0	0	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	g0046	1	0	1	0	0	0	CILP2	chr19	19533265	19551659
CILP_chr15_65189760_65216473	0/0	g0001	53	7	10	26	3	7	CILP	chr15	65189760	65216473