JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIP2A_chr3_108544864_108594438	0/0	g0358	1	1	0	0	0	0	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	g0359	1	1	0	0	0	0	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	g0360	1	1	0	0	0	0	CIP2A	chr3	108544864	108594438
CIPC_chr14_77093258_77122287	0/0	g0001	69	4	9	45	3	8	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0002	42	4	8	24	1	5	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0003	23	0	0	22	0	1	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0004	20	0	11	7	0	2	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0005	16	3	0	9	0	4	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/1	g0006	13	1	2	3	0	6	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0007	12	1	8	1	1	1	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0008	12	0	5	7	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0009	12	1	4	0	1	6	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	1/0	g0010	11	10	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0011	9	0	0	9	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0012	8	0	1	7	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0013	7	7	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0014	6	6	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0015	6	0	0	6	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0016	6	0	0	6	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0017	5	0	0	5	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0018	5	1	4	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0019	4	1	2	0	1	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0020	4	0	0	0	0	4	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0021	4	0	0	4	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0022	4	3	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0023	4	0	0	4	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0024	4	4	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0025	3	1	1	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0026	3	0	0	3	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0027	3	0	1	0	2	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0028	3	2	0	0	1	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0029	2	0	0	2	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0030	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0031	2	0	2	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0032	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0033	2	0	2	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0034	2	0	0	2	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0035	2	1	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0036	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0037	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0038	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0039	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0040	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0041	2	0	2	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0042	2	0	0	2	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0043	2	0	2	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0044	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0045	2	2	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0046	1	1	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0047	1	0	0	0	0	1	CIPC	chr14	77093258	77122287