JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIPC_chr14_77093258_77122287	0/0	g0098	1	0	0	0	0	1	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0099	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0100	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0101	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0102	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0103	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0104	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0105	1	1	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0106	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0107	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0108	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0109	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0110	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0111	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0112	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0113	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0114	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0115	1	0	1	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0116	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0117	1	0	0	1	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0118	1	1	0	0	0	0	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	g0119	1	1	0	0	0	0	CIPC	chr14	77093258	77122287
CIR1_chr2_174343022_174400712	0/0	g0001	5	0	2	0	1	2	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0002	4	4	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0003	3	3	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0004	3	0	0	3	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0005	3	0	0	3	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0006	3	3	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0007	2	0	0	2	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0008	2	2	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0009	2	2	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0010	2	1	1	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0011	2	2	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0012	2	0	0	2	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0013	2	0	0	2	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0014	2	0	0	2	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0015	2	2	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0016	2	0	0	2	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0017	2	2	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0018	2	2	0	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0019	2	0	1	0	1	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0020	2	0	2	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0021	2	0	0	2	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0022	1	0	0	1	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0023	1	0	1	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0024	1	0	1	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0025	1	0	1	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0026	1	0	0	0	0	1	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0027	1	0	1	0	0	0	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	g0028	1	0	1	0	0	0	CIR1	chr2	174343022	174400712