JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CIRBP_chr19_1264332_1279810	0/0	g0011	2	2	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0012	2	2	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0013	2	2	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0014	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0015	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0016	1	0	0	1	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0017	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0018	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0019	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0020	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0021	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0022	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0023	1	0	1	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0024	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0025	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0026	1	0	0	1	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0027	1	1	0	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0028	1	0	1	0	0	0	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0029	1	0	0	0	0	1	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	g0030	1	0	1	0	0	0	CIRBP	chr19	1264332	1279810
CIROP_chr14_23094062_23109989	0/0	g0001	81	5	30	28	4	14	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/1	g0002	58	0	9	42	1	5	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0003	25	1	4	20	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0004	23	1	3	19	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0005	22	0	0	21	0	1	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0006	17	14	0	0	0	3	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0007	17	3	1	6	1	6	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0008	15	1	4	4	0	6	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0009	14	2	0	11	0	1	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0010	11	1	5	0	1	4	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0011	8	0	0	8	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0012	8	6	1	0	0	1	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0013	7	0	2	5	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0014	7	7	0	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0015	7	0	0	7	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0016	6	0	3	3	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0017	6	6	0	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	1/0	g0018	5	4	0	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0019	5	4	1	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0020	4	0	0	4	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0021	4	4	0	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0022	4	4	0	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0023	4	0	0	4	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0024	3	0	0	3	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0025	3	0	1	1	0	1	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0026	3	3	0	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0027	3	0	3	0	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0028	3	0	0	3	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0029	2	0	0	2	0	0	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	g0030	2	0	0	0	0	2	CIROP	chr14	23094062	23109989