JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADAMTS3_chr4_72275969_72574221	0/0	g0169	1	1	0	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/1	g0170	1	0	0	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0171	1	0	1	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0172	1	0	0	0	0	1	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0173	1	0	0	0	0	1	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0174	1	0	1	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0175	1	0	1	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0176	1	0	0	0	0	1	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0177	1	1	0	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0178	1	0	1	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0179	1	0	1	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0180	1	1	0	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0181	1	1	0	0	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	g0182	1	0	0	1	0	0	ADAMTS3	chr4	72275969	72574221
ADAMTS4_chr1_161179302_161204054	0/0	g0001	20	2	7	3	4	4	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0002	16	1	2	5	3	5	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0003	9	9	0	0	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0004	8	0	3	2	0	3	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0005	6	6	0	0	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0006	5	2	0	3	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0007	5	0	0	5	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0008	4	0	0	4	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0009	4	0	0	3	0	1	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0010	3	0	0	3	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0011	3	0	1	1	0	1	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0012	3	0	1	2	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0013	3	2	0	1	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0014	3	0	0	3	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0015	3	0	0	3	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0016	3	1	0	2	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0017	3	0	0	3	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0018	3	0	2	0	0	1	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0019	3	0	1	2	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0020	3	1	0	2	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0021	3	0	0	3	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0022	3	0	0	3	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0023	2	0	1	0	1	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0024	2	0	1	0	0	1	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0025	2	0	0	2	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0026	2	1	1	0	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0027	2	0	0	1	0	1	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0028	2	0	0	2	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0029	2	0	1	0	0	1	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0030	2	0	1	1	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0031	2	0	2	0	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0032	2	0	0	0	0	2	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0033	2	0	0	2	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	1/0	g0034	2	0	1	0	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0035	2	1	1	0	0	0	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	g0036	2	1	0	0	0	1	ADAMTS4	chr1	161179302	161204054