JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADAMTSL5_chr19_1500022_1518019	0/0	g0216	1	0	0	0	1	0	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	g0217	1	0	0	0	1	0	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	g0218	1	0	0	0	1	0	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	g0219	1	0	0	1	0	0	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	g0220	1	0	0	1	0	0	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	g0221	1	0	1	0	0	0	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	g0222	1	0	0	1	0	0	ADAMTSL5	chr19	1500022	1518019
ADAP1_chr7_892900_959680	0/0	g0001	1	1	0	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0002	1	0	0	0	0	1	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0003	1	0	1	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/1	g0004	1	0	0	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0005	1	0	0	0	0	1	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0006	1	1	0	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0007	1	0	1	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0008	1	0	1	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0009	1	0	0	0	0	1	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	1/0	g0010	1	0	0	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0011	1	1	0	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0012	1	1	0	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0013	1	0	1	0	0	0	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	g0014	1	0	0	0	0	1	ADAP1	chr7	892900	959680
ADAP2_chr17_30916945_30964322	0/0	g0001	7	0	4	3	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0002	7	1	2	4	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0003	4	0	0	3	0	1	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0004	4	0	3	1	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0005	3	1	2	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0006	3	0	2	1	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0007	3	3	0	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0008	2	0	1	0	1	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0009	2	0	2	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0010	2	0	0	2	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0011	2	0	0	0	1	1	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0012	2	0	0	2	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0013	2	2	0	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0014	2	0	0	2	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0015	2	0	2	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/1	g0016	2	0	1	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0017	2	0	1	0	1	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0018	2	2	0	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0019	2	0	2	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0020	2	2	0	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0021	2	2	0	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0022	2	0	2	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0023	2	1	1	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0024	1	0	0	0	0	1	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0025	1	0	1	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0026	1	0	0	1	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0027	1	1	0	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0028	1	1	0	0	0	0	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	g0029	1	0	1	0	0	0	ADAP2	chr17	30916945	30964322