JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADGRF3_chr2_26303175_26351789	0/0	g0260	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0261	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0262	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0263	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0264	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0265	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0266	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0267	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0268	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0269	1	0	0	0	0	1	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0270	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0271	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0272	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0273	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0274	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0275	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0276	1	0	0	1	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0277	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0278	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0279	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0280	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0281	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0282	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0283	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0284	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0285	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0286	1	1	0	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0287	1	0	0	1	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0288	1	0	0	1	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0289	1	0	0	0	1	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0290	1	0	0	0	1	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0291	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	g0292	1	0	1	0	0	0	ADGRF3	chr2	26303175	26351789
ADGRF4_chr6_47693580_47727014	0/1	g0001	46	5	18	10	4	8	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0002	38	4	6	23	2	3	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0003	32	0	4	28	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0004	28	0	7	20	0	1	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0005	21	0	4	11	1	5	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0006	16	2	10	0	3	1	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0007	11	10	1	0	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0008	9	8	1	0	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0009	8	0	0	8	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0010	7	0	0	7	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0011	6	0	5	0	1	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0012	5	5	0	0	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0013	4	0	0	4	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0014	4	3	1	0	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0015	4	0	0	4	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0016	4	0	0	4	0	0	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	g0017	4	4	0	0	0	0	ADGRF4	chr6	47693580	47727014