JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADGRV1_chr5_90553797_91169437	0/0	g0135	1	0	1	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0136	1	0	0	1	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0137	1	0	1	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0138	1	0	1	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0139	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0140	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0141	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0142	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0143	1	0	0	1	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0144	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0145	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0146	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0147	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0148	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0149	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0150	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0151	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0152	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0153	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0154	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0155	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0156	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0157	1	1	0	0	0	0	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	g0158	1	0	1	0	0	0	ADGRV1	chr5	90553797	91169437
ADH1A_chr4_99271369_99295985	0/0	g0001	60	1	9	41	3	6	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0002	40	0	17	19	1	3	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0003	26	3	11	6	3	3	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0004	16	0	0	16	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	1/0	g0005	15	1	4	3	2	4	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0006	14	2	4	7	0	1	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0007	12	9	3	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0008	10	9	1	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0009	9	0	0	2	1	6	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0010	7	6	1	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0011	7	1	3	1	0	2	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0012	7	7	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0013	6	6	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0014	5	1	0	4	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0015	4	4	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0016	4	0	0	0	0	4	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0017	4	4	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0018	3	0	0	3	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0019	3	0	0	3	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0020	2	0	0	2	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0021	2	2	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0022	2	2	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0023	2	0	0	2	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0024	2	2	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0025	2	2	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0026	2	0	0	1	0	1	ADH1A	chr4	99271369	99295985