JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADH1A_chr4_99271369_99295985	0/0	g0077	1	0	0	0	1	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0078	1	0	0	1	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0079	1	0	1	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0080	1	0	1	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0081	1	0	0	0	0	1	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0082	1	1	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0083	1	1	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0084	1	1	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0085	1	0	0	1	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0086	1	0	1	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0087	1	1	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0088	1	1	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0089	1	0	1	0	0	0	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0090	1	0	0	0	0	1	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	g0091	1	1	0	0	0	0	ADH1A	chr4	99271369	99295985
ADH1B_chr4_99299971_99326401	0/0	g0001	51	0	0	51	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0002	39	0	16	20	1	2	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0003	12	0	0	8	0	4	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0004	11	0	0	2	2	7	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0005	10	1	2	6	0	1	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0006	8	0	0	8	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0007	8	0	1	4	1	2	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0008	7	0	0	7	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0009	7	1	3	0	2	1	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0010	7	6	1	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0011	6	6	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0012	6	4	2	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0013	5	5	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0014	5	2	1	0	0	2	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0015	4	4	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0016	4	0	0	4	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0017	4	4	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0018	4	1	2	1	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0019	4	4	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0020	3	0	2	0	0	1	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0021	3	0	0	0	0	3	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0022	3	0	1	0	0	2	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0023	3	0	1	0	2	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0024	3	0	1	0	2	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0025	3	3	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0026	3	0	2	1	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0027	3	0	1	1	1	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0028	3	0	3	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0029	3	3	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0030	2	2	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0031	2	2	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0032	2	2	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0033	2	2	0	0	0	0	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0034	2	0	0	0	0	2	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	g0035	2	0	0	1	1	0	ADH1B	chr4	99299971	99326401