JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADH1C_chr4_99331497_99357746	0/0	g0196	1	0	1	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0197	1	0	1	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0198	1	0	0	0	0	1	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0199	1	0	0	0	0	1	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0200	1	1	0	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0201	1	1	0	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0202	1	1	0	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0203	1	1	0	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0204	1	0	1	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0205	1	0	0	0	0	1	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0206	1	0	0	0	0	1	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0207	1	0	0	0	0	1	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0208	1	1	0	0	0	0	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	g0209	1	0	0	1	0	0	ADH1C	chr4	99331497	99357746
ADH4_chr4_99118658_99149297	0/0	g0001	48	1	15	29	1	2	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0002	38	0	0	38	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0003	24	1	8	9	0	6	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0004	23	1	9	4	4	5	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0005	21	15	6	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0006	20	0	1	14	2	3	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/1	g0007	12	2	9	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0008	7	7	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0009	7	1	3	0	2	1	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0010	6	0	3	0	2	1	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0011	6	6	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0012	5	0	0	5	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0013	4	4	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0014	4	1	2	0	0	1	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0015	4	0	0	4	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0016	4	0	0	4	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0017	4	4	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0018	4	4	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0019	3	3	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0020	3	1	0	0	0	2	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0021	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0022	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0023	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0024	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0025	2	0	0	2	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0026	2	0	0	2	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0027	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0028	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0029	2	0	0	2	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0030	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0031	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0032	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0033	2	1	1	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0034	2	2	0	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0035	1	0	1	0	0	0	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	g0036	1	0	0	1	0	0	ADH4	chr4	99118658	99149297