JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADH5_chr4_99065978_99093788	0/0	g0140	1	1	0	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0141	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0142	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0143	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0144	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0145	1	0	1	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0146	1	0	1	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0147	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0148	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0149	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0150	1	1	0	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0151	1	1	0	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0152	1	1	0	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0153	1	1	0	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0154	1	0	0	1	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0155	1	1	0	0	0	0	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	g0156	1	1	0	0	0	0	ADH5	chr4	99065978	99093788
ADH6_chr4_99197639_99224246	0/0	g0001	75	11	11	43	2	8	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0002	32	0	15	14	1	2	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0003	19	2	5	5	2	5	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0004	17	1	1	10	0	5	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0005	14	0	5	5	1	3	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0006	12	12	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/1	g0007	10	3	6	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0008	9	9	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0009	8	7	1	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0010	6	0	3	3	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0011	4	4	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0012	4	1	0	3	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0013	3	0	1	1	0	1	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0014	3	1	0	0	0	2	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0015	3	0	3	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0016	3	0	0	3	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0017	3	0	0	3	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0018	2	0	0	2	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0019	2	2	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0020	2	0	1	1	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0021	2	2	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0022	2	0	1	0	0	1	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0023	2	2	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0024	2	2	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0025	2	0	2	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0026	2	2	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0027	2	2	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0028	1	0	1	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0029	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0030	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0031	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0032	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0033	1	1	0	0	0	0	ADH6	chr4	99197639	99224246