JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADH6_chr4_99197639_99224246	0/0	g0084	1	0	0	1	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0085	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0086	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0087	1	0	0	1	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0088	1	0	0	0	0	1	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0089	1	0	0	0	0	1	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0090	1	0	0	0	0	1	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0091	1	0	0	1	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0092	1	0	0	0	0	1	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0093	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	g0094	1	1	0	0	0	0	ADH6	chr4	99197639	99224246
ADH7_chr4_99407263_99440342	0/0	g0001	43	0	0	43	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0002	20	0	2	16	0	2	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0003	16	0	9	6	0	1	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0004	14	1	4	6	1	2	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0005	10	7	3	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0006	8	1	0	6	0	1	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0007	8	0	0	8	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0008	5	0	2	0	3	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0009	5	5	0	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0010	5	1	3	0	0	1	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0011	5	3	2	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0012	5	0	0	5	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0013	4	0	3	1	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0014	4	4	0	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0015	4	0	2	0	2	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0016	3	0	0	1	0	2	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0017	3	0	2	0	1	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0018	3	3	0	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0019	3	0	0	3	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0020	3	2	1	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0021	3	0	0	3	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0022	3	0	1	2	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0023	3	0	0	3	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0024	3	0	0	3	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0025	3	0	0	3	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0026	2	2	0	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0027	2	2	0	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0028	2	1	1	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0029	2	2	0	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0030	2	0	0	2	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0031	2	0	0	0	0	2	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0032	2	0	2	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0033	2	0	2	0	0	0	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0034	2	0	0	0	0	2	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0035	2	0	0	1	0	1	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0036	2	0	0	1	0	1	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0037	2	0	0	1	0	1	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0038	2	0	0	1	0	1	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	g0039	2	0	0	2	0	0	ADH7	chr4	99407263	99440342