JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADI1_chr2_3492366_3524531	0/0	g0245	1	0	0	0	0	1	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	g0246	1	1	0	0	0	0	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	g0247	1	0	0	1	0	0	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	g0248	1	1	0	0	0	0	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	g0249	1	1	0	0	0	0	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	g0250	1	1	0	0	0	0	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	g0251	1	0	1	0	0	0	ADI1	chr2	3492366	3524531
ADIG_chr20_38576197_38593463	0/1	g0001	117	3	27	68	5	13	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	1/0	g0002	43	5	6	21	3	7	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0003	29	0	1	28	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0004	27	6	4	12	2	3	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0005	12	11	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0006	9	0	4	2	0	3	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0007	7	0	0	7	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0008	7	6	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0009	7	7	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0010	6	6	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0011	5	1	0	0	1	3	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0012	4	0	1	0	2	1	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0013	4	1	3	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0014	4	4	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0015	3	0	0	3	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0016	3	3	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0017	3	3	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0018	3	3	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0019	3	3	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0020	3	2	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0021	3	0	3	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0022	3	2	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0023	3	1	0	0	0	2	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0024	3	0	0	0	0	3	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0025	3	2	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0026	2	1	0	0	0	1	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0027	2	2	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0028	2	0	0	2	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0029	2	2	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0030	2	2	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0031	2	0	0	2	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0032	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0033	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0034	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0035	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0036	1	0	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0037	1	0	0	0	0	1	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0038	1	0	0	0	0	1	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0039	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0040	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0041	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0042	1	0	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0043	1	0	0	0	0	1	ADIG	chr20	38576197	38593463