JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADIG_chr20_38576197_38593463	0/0	g0044	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0045	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0046	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0047	1	0	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0048	1	0	0	0	0	1	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0049	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0050	1	0	0	0	0	1	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0051	1	0	0	0	0	1	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0052	1	0	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0053	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0054	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0055	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0056	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0057	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0058	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0059	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0060	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0061	1	0	0	0	1	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0062	1	0	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0063	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0064	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0065	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0066	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0067	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0068	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0069	1	0	1	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0070	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0071	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0072	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0073	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0074	1	0	0	1	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0075	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0076	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	g0077	1	1	0	0	0	0	ADIG	chr20	38576197	38593463
ADIPOQ_chr3_186837710_186863463	0/0	g0001	49	4	11	28	2	4	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0002	18	1	3	13	1	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0003	16	0	0	16	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0004	13	0	0	13	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0005	11	0	1	5	2	3	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0006	10	3	2	5	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0007	10	0	4	4	0	2	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0008	10	0	1	3	0	6	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0009	9	0	0	8	0	1	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0010	9	9	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0011	9	0	0	7	0	2	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0012	8	0	0	8	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0013	6	1	0	3	1	1	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0014	5	0	4	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0015	5	5	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0016	5	1	3	0	0	1	ADIPOQ	chr3	186837710	186863463