JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADIPOQ_chr3_186837710_186863463	0/0	g0217	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0218	1	0	0	0	1	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0219	1	0	0	0	0	1	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0220	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0221	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0222	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0223	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0224	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/1	g0225	1	0	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0226	1	0	0	0	1	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0227	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0228	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0229	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0230	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0231	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0232	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0233	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0234	1	0	1	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0235	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0236	1	1	0	0	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0237	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0238	1	0	0	1	0	0	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	g0239	1	0	0	0	1	0	ADIPOQ	chr3	186837710	186863463
ADIPOR1_chr1_202935832_202963312	0/0	g0001	31	0	1	27	0	3	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0002	24	1	10	6	4	3	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0003	23	1	0	17	0	5	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/1	g0004	22	1	4	14	1	1	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0005	20	2	7	9	0	2	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	1/0	g0006	17	9	2	5	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0007	15	0	7	8	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0008	14	0	0	13	0	1	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0009	11	0	3	3	0	5	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0010	10	0	7	2	1	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0011	7	0	1	6	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0012	6	2	3	0	1	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0013	5	0	0	5	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0014	5	0	1	4	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0015	5	5	0	0	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0016	5	1	2	2	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0017	5	5	0	0	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0018	4	0	0	4	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0019	4	1	0	3	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0020	4	0	4	0	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0021	3	0	1	2	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0022	3	3	0	0	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0023	3	0	2	1	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0024	3	0	0	3	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0025	3	0	1	2	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0026	3	0	0	3	0	0	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	g0027	3	0	0	3	0	0	ADIPOR1	chr1	202935832	202963312