JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADIPOR2_chr12_1686070_1793674	0/0	g0353	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0354	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0355	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0356	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0357	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0358	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0359	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0360	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0361	1	0	0	0	0	1	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0362	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0363	1	0	0	0	0	1	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0364	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0365	1	0	0	0	0	1	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0366	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0367	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0368	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0369	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0370	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0371	1	0	1	0	0	0	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	g0372	1	0	0	1	0	0	ADIPOR2	chr12	1686070	1793674
ADIRF_chr10_86963482_86975915	0/0	g0001	222	23	39	126	10	24	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	1/1	g0002	150	47	33	44	8	16	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0003	12	7	4	1	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0004	10	10	0	0	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0005	3	0	0	0	0	3	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0006	3	3	0	0	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0007	2	1	1	0	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0008	1	0	0	0	0	1	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0009	1	1	0	0	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0010	1	0	1	0	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0011	1	1	0	0	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0012	1	1	0	0	0	0	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	g0013	1	0	0	1	0	0	ADIRF	chr10	86963482	86975915
ADISSP_chr20_3748508_3772753	0/1	g0001	36	1	4	26	1	3	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0002	18	0	2	16	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0003	15	1	7	5	1	1	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0004	12	0	6	6	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0005	9	0	1	8	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0006	9	0	5	4	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0007	9	0	0	8	0	1	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0008	5	0	4	0	0	1	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0009	4	0	0	0	1	3	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0010	4	4	0	0	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0011	4	0	0	4	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0012	4	0	0	4	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0013	4	0	0	3	0	1	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0014	3	0	0	3	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0015	3	0	0	3	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0016	3	0	3	0	0	0	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	g0017	3	0	0	3	0	0	ADISSP	chr20	3748508	3772753