JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADM2_chr22_50476543_50491437	0/0	g0002	12	0	0	10	0	2	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	g0003	4	0	0	4	0	0	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	g0004	2	0	0	0	0	2	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	g0005	1	0	0	1	0	0	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	g0006	1	1	0	0	0	0	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	g0007	1	0	0	1	0	0	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	g0008	1	0	0	1	0	0	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	g0009	1	0	0	1	0	0	ADM2	chr22	50476543	50491437
ADM5_chr19_49684594_49695575	1/1	g0001	392	92	78	156	14	50	ADM5	chr19	49684594	49695575
ADM_chr11_10300073_10312397	1/1	g0001	389	88	68	177	16	38	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0002	10	3	0	5	0	2	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0003	2	0	0	0	1	1	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0004	2	0	2	0	0	0	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0005	1	0	0	0	0	1	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0006	1	1	0	0	0	0	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0007	1	0	0	0	1	0	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0008	1	1	0	0	0	0	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	g0009	1	1	0	0	0	0	ADM	chr11	10300073	10312397
ADNP2_chr18_80104262_80145346	0/0	g0001	28	3	7	14	0	4	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0002	24	1	2	19	0	2	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0003	12	0	1	8	1	2	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0004	8	0	0	8	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0005	5	1	4	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0006	5	0	4	0	0	1	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0007	5	0	0	5	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0008	4	0	0	4	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0009	4	0	0	4	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0010	4	0	4	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0011	4	0	1	0	0	3	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0012	3	0	3	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0013	3	0	0	3	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0014	3	1	0	2	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0015	3	1	0	2	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0016	3	0	0	2	0	1	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0017	3	0	3	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0018	3	0	2	0	1	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0019	3	2	1	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0020	3	2	1	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0021	3	0	0	2	1	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0022	3	3	0	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0023	2	2	0	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0024	2	0	0	2	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0025	2	0	1	1	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0026	2	0	0	1	0	1	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0027	2	0	1	1	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0028	2	0	0	2	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0029	2	2	0	0	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0030	2	0	0	2	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0031	2	1	0	1	0	0	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	g0032	2	0	0	2	0	0	ADNP2	chr18	80104262	80145346