JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCA3_chr16_2270881_2345728	0/0	g0227	1	1	0	0	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0228	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0229	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0230	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0231	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0232	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0233	1	0	0	0	1	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0234	1	0	0	0	0	1	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0235	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0236	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0237	1	0	0	0	0	1	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0238	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0239	1	0	0	0	1	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0240	1	1	0	0	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0241	1	0	0	0	0	1	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0242	1	0	0	0	0	1	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0243	1	0	1	0	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0244	1	0	0	1	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0245	1	0	0	0	1	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0246	1	0	1	0	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0247	1	0	1	0	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0248	1	0	0	0	1	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0249	1	1	0	0	0	0	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	g0250	1	0	1	0	0	0	ABCA3	chr16	2270881	2345728
ABCA4_chr1_93987834_94126148	0/0	g0001	2	0	2	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0002	2	0	0	0	0	2	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0003	2	0	2	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0004	2	1	1	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0005	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0006	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0007	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0008	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0009	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0010	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0011	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0012	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0013	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0014	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0015	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0016	1	0	1	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0017	1	0	1	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0018	1	0	1	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0019	1	0	0	0	1	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0020	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0021	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0022	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0023	1	1	0	0	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0024	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0025	1	0	0	1	0	0	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	g0026	1	0	1	0	0	0	ABCA4	chr1	93987834	94126148