JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AFMID_chr17_78182362_78212702	0/0	g0353	1	0	1	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0354	1	0	0	0	0	1	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0355	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0356	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0357	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0358	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0359	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0360	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0361	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0362	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0363	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0364	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0365	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0366	1	0	1	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0367	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0368	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0369	1	0	1	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0370	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0371	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0372	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0373	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0374	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0375	1	0	0	0	0	1	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0376	1	0	1	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0377	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0378	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0379	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0380	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0381	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0382	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0383	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0384	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0385	1	0	0	1	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0386	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0387	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0388	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0389	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0390	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0391	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0392	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0393	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	g0394	1	1	0	0	0	0	AFMID	chr17	78182362	78212702
AFM_chr4_73476745_73509001	0/0	g0001	13	2	3	5	0	3	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0002	12	0	1	8	0	3	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0003	10	2	0	7	0	1	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0004	10	0	5	4	0	1	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0005	7	0	1	3	2	1	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0006	7	0	2	3	0	2	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0007	7	1	2	4	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0008	6	0	4	2	0	0	AFM	chr4	73476745	73509001