JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AFM_chr4_73476745_73509001	0/0	g0209	1	0	1	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0210	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0211	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0212	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0213	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0214	1	0	0	0	1	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0215	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0216	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0217	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0218	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0219	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0220	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0221	1	0	1	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0222	1	1	0	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0223	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0224	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0225	1	0	0	1	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0226	1	1	0	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0227	1	1	0	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0228	1	1	0	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0229	1	1	0	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0230	1	1	0	0	0	0	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	g0231	1	1	0	0	0	0	AFM	chr4	73476745	73509001
AFP_chr4_73431221_73461174	0/0	g0001	76	16	9	39	5	7	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0002	31	5	10	12	2	2	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0003	22	0	7	13	1	1	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0004	14	0	0	14	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0005	13	0	11	2	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0006	12	0	0	12	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0007	10	0	4	6	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0008	10	0	4	0	2	4	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0009	9	4	0	2	1	2	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0010	8	7	0	1	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0011	8	0	0	8	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0012	7	2	1	1	0	3	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0013	6	0	0	6	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0014	6	0	5	0	0	1	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0015	6	0	3	0	1	2	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0016	5	1	0	2	1	1	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0017	5	0	0	5	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0018	5	5	0	0	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0019	4	3	1	0	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0020	4	0	0	4	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0021	4	0	0	4	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0022	4	1	2	1	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0023	3	2	1	0	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0024	3	0	1	0	2	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0025	3	3	0	0	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0026	2	2	0	0	0	0	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	g0027	2	0	0	0	0	2	AFP	chr4	73431221	73461174