JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGAP1_chr2_235489043_236136793	0/0	g0090	1	1	0	0	0	0	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0091	1	1	0	0	0	0	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0092	1	0	0	0	0	1	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0093	1	0	1	0	0	0	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0094	1	0	0	0	0	1	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0095	1	1	0	0	0	0	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0096	1	1	0	0	0	0	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0097	1	1	0	0	0	0	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	g0098	1	1	0	0	0	0	AGAP1	chr2	235489043	236136793
AGAP2_chr12_57720197_57743742	0/0	g0001	44	2	8	29	1	4	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0002	41	2	17	13	3	6	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0003	30	2	13	9	4	2	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0004	15	0	5	9	0	1	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0005	10	0	4	6	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0006	9	0	0	9	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0007	8	7	1	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0008	7	0	0	7	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0009	7	1	0	6	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0010	5	0	0	2	0	3	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0011	5	4	0	0	0	1	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0012	5	4	1	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0013	5	4	1	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0014	4	0	0	4	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0015	4	0	0	4	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0016	4	4	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0017	4	2	2	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0018	3	0	0	2	0	1	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0019	3	0	0	2	0	1	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0020	3	3	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0021	3	3	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0022	3	0	0	3	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0023	3	3	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0024	3	3	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0025	3	3	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0026	3	3	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0027	2	0	1	1	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0028	2	0	0	1	0	1	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0029	2	1	1	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0030	2	2	0	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0031	2	0	0	2	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0032	2	0	0	2	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0033	2	0	0	2	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0034	2	0	0	0	0	2	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0035	2	0	0	2	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0036	2	0	0	2	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0037	2	0	1	1	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0038	2	0	0	2	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0039	2	0	0	0	0	2	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0040	2	0	2	0	0	0	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	g0041	2	0	2	0	0	0	AGAP2	chr12	57720197	57743742