JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGAP9_chr10_47496854_47528638	0/0	g0150	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0151	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0152	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0153	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0154	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0155	1	0	1	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0156	1	0	1	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0157	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0158	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0159	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0160	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0161	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0162	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0163	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0164	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0165	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0166	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0167	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0168	1	0	0	0	0	1	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0169	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0170	1	0	0	0	0	1	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0171	1	0	0	0	0	1	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0172	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0173	1	0	0	0	0	1	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0174	1	0	1	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0175	1	0	1	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0176	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0177	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0178	1	0	1	0	0	0	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	g0179	1	1	0	0	0	0	AGAP9	chr10	47496854	47528638
AGA_chr4_177425774_177447437	0/0	g0001	41	0	9	22	1	9	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0002	36	0	5	26	3	2	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0003	29	0	0	28	1	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0004	14	1	6	3	0	4	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0005	12	5	3	0	2	2	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0006	10	1	2	6	0	1	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0007	9	2	4	2	1	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0008	8	0	2	6	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/1	g0009	8	0	1	1	3	2	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0010	8	0	0	8	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0011	7	0	0	6	0	1	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0012	6	0	0	5	0	1	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0013	6	0	0	6	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0014	6	0	0	5	0	1	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0015	6	1	2	3	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0016	5	0	5	0	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0017	5	0	0	5	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0018	5	5	0	0	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0019	5	2	0	3	0	0	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	g0020	5	5	0	0	0	0	AGA	chr4	177425774	177447437