JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCA6_chr17_69073702_69146895	0/0	g0278	1	1	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0279	1	1	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0280	1	1	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0281	1	0	1	0	0	0	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	g0282	1	1	0	0	0	0	ABCA6	chr17	69073702	69146895
ABCA7_chr19_1035107_1070572	0/0	g0001	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0002	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0003	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0004	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0005	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0006	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0007	1	0	0	0	0	1	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0008	1	0	0	0	1	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0009	1	0	0	0	1	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	1/0	g0010	1	0	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0011	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/1	g0012	1	0	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0013	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0014	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0015	1	0	1	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0016	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0017	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0018	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0019	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0020	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0021	1	1	0	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0022	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0023	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0024	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0025	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0026	1	0	0	0	0	1	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0027	1	0	1	0	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0028	1	0	0	0	0	1	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0029	1	0	0	1	0	0	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	g0030	1	0	0	0	0	1	ABCA7	chr19	1035107	1070572
ABCA8_chr17_68862289_68960392	0/0	g0001	2	0	2	0	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0002	1	0	0	0	0	1	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0003	1	0	0	0	0	1	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0004	1	1	0	0	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0005	1	0	1	0	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0006	1	0	0	1	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0007	1	0	0	1	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0008	1	0	0	1	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0009	1	0	0	1	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0010	1	0	0	1	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0011	1	0	0	0	0	1	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0012	1	1	0	0	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0013	1	0	1	0	0	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0014	1	0	0	0	1	0	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	g0015	1	0	0	1	0	0	ABCA8	chr17	68862289	68960392