JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGBL5_chr2_27046668_27075618	0/0	g0156	1	0	0	1	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0157	1	0	0	1	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0158	1	0	1	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0159	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0160	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0161	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0162	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0163	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0164	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0165	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0166	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0167	1	0	1	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0168	1	0	0	0	0	1	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0169	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0170	1	0	1	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0171	1	0	1	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0172	1	0	1	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0173	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0174	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0175	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0176	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0177	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0178	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0179	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0180	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0181	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0182	1	1	0	0	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0183	1	0	0	1	0	0	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	g0184	1	0	0	0	0	1	AGBL5	chr2	27046668	27075618
AGER_chr6_32175969_32189253	0/0	g0001	64	15	15	30	2	2	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0002	57	14	17	14	2	10	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0003	51	2	14	30	1	4	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0004	38	0	0	37	0	1	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/1	g0005	36	0	8	19	4	4	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0006	35	2	0	28	0	5	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0007	34	15	3	3	3	10	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0008	23	15	6	1	1	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0009	20	0	3	13	0	4	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0010	19	12	0	6	0	1	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0011	18	1	1	16	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0012	15	7	6	0	2	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0013	11	1	1	9	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0014	8	6	2	0	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0015	7	0	5	2	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0016	4	1	2	0	0	1	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0017	2	0	0	2	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0018	2	0	0	2	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0019	2	0	0	2	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0020	2	0	0	2	0	0	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	g0021	1	0	0	1	0	0	AGER	chr6	32175969	32189253