JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGO4_chr1_35803016_35862890	0/0	g0218	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0219	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0220	1	0	0	0	1	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0221	1	0	0	0	1	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0222	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0223	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0224	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0225	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0226	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0227	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0228	1	0	0	0	1	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0229	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0230	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0231	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0232	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0233	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0234	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0235	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0236	1	0	0	1	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0237	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0238	1	0	1	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0239	1	0	1	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0240	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0241	1	0	1	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0242	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0243	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0244	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0245	1	0	1	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0246	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	1/0	g0247	1	0	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0248	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0249	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0250	1	0	1	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0251	1	0	1	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0252	1	0	1	0	0	0	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0253	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0254	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0255	1	0	0	0	0	1	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	g0256	1	1	0	0	0	0	AGO4	chr1	35803016	35862890
AGPAT1_chr6_32163212_32181084	0/0	g0001	63	2	17	34	3	7	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0002	60	12	15	30	2	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0003	38	2	2	28	0	6	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0004	37	20	7	2	3	5	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0005	33	0	0	32	0	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/1	g0006	24	0	8	11	2	2	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0007	23	17	2	3	0	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0008	19	9	4	5	0	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0009	16	0	0	14	0	2	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0010	16	4	4	1	1	6	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0011	14	7	5	0	2	0	AGPAT1	chr6	32163212	32181084