JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGPAT1_chr6_32163212_32181084	0/0	g0012	14	0	0	14	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0013	7	0	0	1	1	5	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0014	6	0	5	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0015	6	0	1	4	0	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0016	5	5	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0017	5	0	0	2	0	3	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0018	5	1	2	0	1	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0019	4	1	1	2	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0020	4	3	1	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0021	4	0	0	4	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0022	3	0	0	3	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0023	3	0	0	3	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0024	3	0	3	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0025	3	3	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0026	2	0	0	2	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0027	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0028	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0029	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0030	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0031	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0032	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0033	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0034	1	0	1	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0035	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0036	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0037	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0038	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0039	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0040	1	0	0	0	1	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0041	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0042	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0043	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0044	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0045	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0046	1	0	0	0	0	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0047	1	0	0	1	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0048	1	0	1	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0049	1	0	1	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0050	1	0	0	0	0	1	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0051	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0052	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0053	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	g0054	1	1	0	0	0	0	AGPAT1	chr6	32163212	32181084
AGPAT2_chr9_136668143_136692457	0/0	g0001	16	0	3	12	0	1	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	g0002	11	0	6	3	2	0	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	g0003	10	1	6	1	0	2	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	g0004	7	7	0	0	0	0	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	g0005	7	0	0	7	0	0	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	g0006	6	0	0	6	0	0	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	g0007	5	0	1	1	0	3	AGPAT2	chr9	136668143	136692457