JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGR2_chr7_16786811_16809999	0/0	g0218	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0219	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0220	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0221	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0222	1	0	1	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0223	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0224	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0225	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0226	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0227	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0228	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0229	1	0	1	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0230	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0231	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0232	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0233	1	0	0	0	0	1	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0234	1	0	1	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0235	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0236	1	0	0	0	0	1	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0237	1	0	0	0	0	1	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0238	1	0	0	0	0	1	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0239	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0240	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0241	1	0	1	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0242	1	0	0	0	0	1	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0243	1	1	0	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0244	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0245	1	0	1	0	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0246	1	0	0	0	0	1	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0247	1	0	0	0	0	1	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0248	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0249	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	g0250	1	0	0	1	0	0	AGR2	chr7	16786811	16809999
AGR3_chr7_16854412_16886983	0/1	g0001	14	1	5	4	3	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0002	14	0	0	13	0	1	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0003	12	1	0	9	1	1	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0004	10	0	0	9	0	1	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0005	8	0	0	8	0	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0006	7	0	0	7	0	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0007	6	0	0	6	0	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0008	6	0	0	6	0	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0009	6	0	0	5	0	1	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0010	5	0	0	5	0	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0011	5	0	3	0	0	2	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0012	5	0	3	2	0	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0013	4	0	1	1	0	2	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0014	4	0	2	0	2	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0015	4	0	0	4	0	0	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0016	4	0	1	2	0	1	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	g0017	3	0	0	3	0	0	AGR3	chr7	16854412	16886983