JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGTR2_chrX_116165744_116179974	0/0	g0004	16	12	4	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	1/0	g0005	12	11	0	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0006	10	10	0	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0007	8	8	0	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0008	8	7	1	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0009	3	2	1	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0010	1	0	0	1	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0011	1	1	0	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0012	1	0	0	1	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0013	1	1	0	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0014	1	1	0	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0015	1	1	0	0	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0016	1	0	0	1	0	0	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	g0017	1	0	0	0	0	1	AGTR2	chrX	116165744	116179974
AGTRAP_chr1_11731136_11755769	0/0	g0001	41	0	2	38	0	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0002	26	1	2	17	3	3	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0003	21	0	11	7	0	3	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0004	13	0	2	9	2	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0005	11	5	3	2	0	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0006	11	0	7	1	2	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0007	10	0	1	8	1	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0008	8	2	2	0	0	4	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0009	7	1	2	0	0	4	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	1/0	g0010	7	5	1	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0011	7	0	4	0	1	2	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0012	7	0	0	7	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0013	7	0	1	4	0	2	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0014	6	0	4	1	1	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0015	6	0	0	6	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0016	6	6	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0017	6	0	0	6	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0018	6	0	0	6	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0019	6	0	4	2	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0020	5	0	0	5	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0021	5	1	2	0	2	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0022	5	0	0	5	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0023	5	0	4	0	1	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0024	4	0	0	4	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0025	4	1	2	0	0	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0026	4	4	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0027	3	0	3	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0028	3	0	0	0	0	3	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0029	3	3	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0030	3	1	1	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0031	3	0	3	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0032	3	3	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0033	2	0	2	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0034	2	2	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0035	2	0	0	2	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0036	2	0	0	2	0	0	AGTRAP	chr1	11731136	11755769