JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AGTRAP_chr1_11731136_11755769	0/0	g0137	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0138	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0139	1	0	0	0	0	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0140	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0141	1	1	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0142	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0143	1	0	1	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0144	1	0	1	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0145	1	0	0	0	0	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0146	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0147	1	1	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0148	1	1	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0149	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0150	1	0	0	0	0	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0151	1	0	1	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0152	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0153	1	0	1	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0154	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0155	1	0	0	0	0	1	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0156	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0157	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0158	1	1	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0159	1	0	0	1	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0160	1	1	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0161	1	1	0	0	0	0	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	g0162	1	0	0	0	0	1	AGTRAP	chr1	11731136	11755769
AGT_chr1_230697523_230719122	0/0	g0001	53	7	3	33	1	9	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0002	37	0	9	24	1	3	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0003	25	1	7	9	3	5	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0004	23	13	2	7	0	1	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0005	17	0	0	17	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0006	17	0	5	8	2	2	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0007	16	1	10	5	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0008	14	0	5	6	1	2	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0009	10	8	1	0	1	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0010	9	7	1	1	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0011	9	0	0	9	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0012	8	2	3	0	2	1	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0013	7	6	1	0	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0014	7	0	0	7	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0015	6	0	0	6	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0016	6	0	6	0	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0017	5	0	0	5	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0018	5	4	1	0	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	1/0	g0019	5	0	3	0	1	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0020	5	0	0	3	1	1	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0021	5	0	0	3	0	2	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0022	5	0	0	5	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0023	4	0	4	0	0	0	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	g0024	4	4	0	0	0	0	AGT	chr1	230697523	230719122