JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AHNAK2_chr14_104932253_104983374	0/0	g0281	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0282	1	0	0	0	0	1	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0283	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0284	1	0	1	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0285	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0286	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0287	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0288	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0289	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0290	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0291	1	0	0	1	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0292	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0293	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0294	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0295	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0296	1	0	1	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0297	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0298	1	0	1	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0299	1	0	1	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0300	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0301	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0302	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0303	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	g0304	1	1	0	0	0	0	AHNAK2	chr14	104932253	104983374
AHNAK_chr11_62510902_62551806	0/0	g0001	18	11	2	5	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0002	15	4	4	1	2	4	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0003	6	5	1	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0004	5	5	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0005	5	0	1	4	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0006	4	4	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0007	4	4	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0008	4	0	0	4	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0009	4	4	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0010	4	0	1	3	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0011	4	4	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0012	3	0	0	3	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0013	3	3	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0014	3	0	2	1	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0015	3	0	0	3	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0016	2	0	1	1	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0017	2	0	0	0	0	2	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0018	2	0	2	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0019	2	0	1	0	0	1	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0020	2	0	0	2	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0021	2	2	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0022	2	2	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0023	2	0	2	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0024	2	2	0	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0025	2	1	1	0	0	0	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	g0026	2	0	0	2	0	0	AHNAK	chr11	62510902	62551806