JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AHSG_chr3_186608060_186626318	0/0	g0059	1	0	1	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0060	1	0	0	0	1	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0061	1	1	0	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0062	1	0	0	1	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0063	1	0	1	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0064	1	0	0	1	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0065	1	0	0	0	0	1	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0066	1	1	0	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0067	1	1	0	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0068	1	1	0	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0069	1	1	0	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0070	1	0	1	0	0	0	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	g0071	1	0	0	0	0	1	AHSG	chr3	186608060	186626318
AHSP_chr16_31522900_31533803	1/1	g0001	199	40	46	96	9	6	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	g0002	99	29	9	38	1	22	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	g0003	89	28	19	24	6	12	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	g0004	1	1	0	0	0	0	AHSP	chr16	31522900	31533803
AICDA_chr12_8597170_8617859	0/0	g0001	31	0	0	28	0	3	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0002	26	0	3	22	0	1	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0003	9	0	7	1	1	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0004	7	0	0	6	0	1	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0005	7	0	0	7	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0006	7	0	4	0	0	3	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0007	6	0	4	1	1	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0008	6	0	1	3	0	2	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0009	5	2	2	0	0	1	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0010	5	1	3	0	1	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0011	4	4	0	0	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0012	4	0	0	4	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0013	4	0	0	4	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0014	3	0	0	3	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0015	3	0	0	3	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0016	3	0	0	3	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0017	3	0	0	3	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0018	3	3	0	0	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0019	3	1	2	0	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0020	3	0	0	2	0	1	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0021	3	0	0	2	0	1	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0022	3	0	1	0	2	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0023	3	1	0	2	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0024	3	0	0	3	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0025	3	1	2	0	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0026	2	1	1	0	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0027	2	2	0	0	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0028	2	0	2	0	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0029	2	0	0	2	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0030	2	0	0	2	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0031	2	0	0	2	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0032	2	0	0	2	0	0	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	g0033	2	0	0	2	0	0	AICDA	chr12	8597170	8617859