JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AIG1_chr6_143055889_143346058	0/0	g0195	1	1	0	0	0	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0196	1	1	0	0	0	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0197	1	1	0	0	0	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0198	1	0	0	0	1	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0199	1	1	0	0	0	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0200	1	1	0	0	0	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0201	1	1	0	0	0	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0202	1	1	0	0	0	0	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	g0203	1	0	1	0	0	0	AIG1	chr6	143055889	143346058
AIM2_chr1_159057484_159081766	0/0	g0001	35	0	5	24	3	3	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0002	31	0	0	28	0	3	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/1	g0003	29	2	7	17	1	1	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0004	13	0	2	9	0	2	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0005	8	0	0	4	0	4	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0006	7	0	1	6	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0007	6	6	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0008	6	0	0	6	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0009	6	0	1	3	0	2	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0010	6	0	0	6	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0011	6	0	0	5	0	1	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0012	6	0	0	3	0	3	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0013	5	0	0	5	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0014	5	0	3	1	0	1	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0015	5	5	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0016	5	0	4	0	1	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0017	5	5	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0018	4	0	0	4	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0019	4	0	0	4	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0020	4	0	0	4	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0021	4	0	0	4	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0022	4	0	0	4	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	1/0	g0023	3	1	1	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0024	3	3	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0025	3	0	2	0	0	1	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0026	3	3	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0027	3	0	1	1	0	1	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0028	3	0	1	0	2	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0029	3	0	0	3	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0030	3	3	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0031	3	0	0	3	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0032	2	2	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0033	2	0	2	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0034	2	0	2	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0035	2	0	1	1	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0036	2	2	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0037	2	2	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0038	2	2	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0039	2	2	0	0	0	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0040	2	0	0	0	2	0	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	g0041	2	1	0	0	1	0	AIM2	chr1	159057484	159081766