JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AIP_chr11_67478026_67496103	0/0	g0048	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0049	1	0	1	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0050	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0051	1	0	0	1	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0052	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0053	1	0	1	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0054	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0055	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0056	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/1	g0057	1	0	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0058	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0059	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0060	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0061	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0062	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0063	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	g0064	1	1	0	0	0	0	AIP	chr11	67478026	67496103
AIRE_chr21_44280876_44303648	0/0	g0001	39	1	3	27	0	8	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0002	15	0	0	15	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0003	14	0	0	14	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0004	10	0	7	0	2	1	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0005	9	1	4	1	1	2	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0006	8	0	0	7	0	1	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0007	7	0	3	4	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0008	6	0	0	6	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	1/1	g0009	5	0	1	0	2	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0010	5	0	0	5	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0011	5	0	0	5	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0012	4	1	0	3	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0013	4	0	0	4	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0014	3	0	2	0	1	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0015	3	0	3	0	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0016	3	0	2	0	1	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0017	3	0	0	0	0	3	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0018	3	0	2	0	0	1	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0019	3	0	2	1	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0020	3	0	0	3	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0021	3	0	0	3	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0022	3	0	2	0	1	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0023	3	0	0	3	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0024	3	0	1	0	0	2	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0025	3	0	3	0	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0026	3	0	0	3	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0027	3	0	0	3	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0028	3	0	1	2	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0029	3	3	0	0	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0030	2	1	1	0	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0031	2	2	0	0	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0032	2	0	2	0	0	0	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	g0033	2	2	0	0	0	0	AIRE	chr21	44280876	44303648