JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AJAP1_chr1_4649609_4797534	0/0	g0292	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0293	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0294	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0295	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0296	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0297	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0298	1	0	0	0	1	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0299	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0300	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0301	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0302	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0303	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0304	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0305	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0306	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0307	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0308	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0309	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0310	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0311	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0312	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0313	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0314	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0315	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0316	1	0	0	0	0	1	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0317	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0318	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0319	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0320	1	0	0	1	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0321	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0322	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0323	1	0	1	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0324	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0325	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0326	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0327	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	g0328	1	1	0	0	0	0	AJAP1	chr1	4649609	4797534
AJM1_chr9_136837478_136853801	1/1	g0001	351	79	75	139	14	42	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	g0002	5	4	1	0	0	0	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	g0003	3	3	0	0	0	0	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	g0004	1	0	0	1	0	0	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	g0005	1	1	0	0	0	0	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	g0006	1	0	0	1	0	0	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	g0007	1	0	0	1	0	0	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	g0008	1	1	0	0	0	0	AJM1	chr9	136837478	136853801
AJUBA_chr14_22966177_22987551	0/1	g0001	134	19	32	57	5	20	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0002	32	3	10	13	1	5	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0003	30	15	10	0	2	3	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0004	12	9	1	0	0	2	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0005	8	8	0	0	0	0	AJUBA	chr14	22966177	22987551