JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AJUBA_chr14_22966177_22987551	0/0	g0056	1	1	0	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0057	1	0	0	1	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0058	1	0	0	1	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0059	1	0	0	1	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0060	1	1	0	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0061	1	0	0	1	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0062	1	0	0	1	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0063	1	1	0	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0064	1	1	0	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0065	1	1	0	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0066	1	0	0	0	1	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0067	1	0	1	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0068	1	0	1	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0069	1	1	0	0	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0070	1	0	0	0	0	1	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0071	1	0	0	1	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0072	1	0	0	1	0	0	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	g0073	1	1	0	0	0	0	AJUBA	chr14	22966177	22987551
AK1_chr9_127861486_127882675	0/0	g0001	19	1	0	16	1	1	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0002	12	0	5	7	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0003	10	0	0	10	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0004	9	0	0	9	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0005	9	0	6	0	1	2	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0006	8	7	1	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0007	6	0	1	5	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0008	6	0	1	5	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0009	5	2	1	2	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0010	5	0	0	5	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0011	4	4	0	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0012	4	0	0	4	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0013	4	0	0	0	1	3	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0014	4	0	0	4	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0015	3	3	0	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0016	3	0	0	3	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0017	3	0	2	0	0	1	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0018	3	0	3	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0019	3	0	0	3	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/1	g0020	3	0	2	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0021	3	0	0	3	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0022	3	0	0	3	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0023	3	3	0	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0024	3	0	0	3	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0025	3	0	2	0	0	1	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0026	3	0	0	0	0	3	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0027	3	1	0	2	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0028	3	1	2	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0029	2	2	0	0	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0030	2	0	0	2	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0031	2	0	0	2	0	0	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	g0032	2	0	0	2	0	0	AK1	chr9	127861486	127882675