JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AK3_chr9_4704556_4746202	0/0	g0412	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0413	1	0	0	0	0	1	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0414	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0415	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0416	1	0	0	0	1	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0417	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0418	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0419	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0420	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0421	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0422	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0423	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0424	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0425	1	0	1	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0426	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0427	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0428	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0429	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0430	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0431	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0432	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0433	1	0	0	0	1	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0434	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0435	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0436	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0437	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0438	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0439	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0440	1	0	0	0	0	1	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0441	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0442	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0443	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0444	1	0	0	1	0	0	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	g0445	1	1	0	0	0	0	AK3	chr9	4704556	4746202
AK4_chr1_65143203_65237145	0/0	g0001	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0002	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0003	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0004	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0005	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0006	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0007	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0008	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0009	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0010	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0011	1	1	0	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0012	1	0	1	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0013	1	0	0	0	1	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0014	1	0	1	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0015	1	0	1	0	0	0	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	g0016	1	1	0	0	0	0	AK4	chr1	65143203	65237145