JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AK5_chr1_77277019_77564966	0/0	g0267	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0268	1	0	1	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0269	1	0	1	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0270	1	0	1	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0271	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0272	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0273	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0274	1	0	1	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0275	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0276	1	0	0	1	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0277	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0278	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0279	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0280	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0281	1	1	0	0	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0282	1	0	0	1	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0283	1	0	0	1	0	0	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	g0284	1	0	0	1	0	0	AK5	chr1	77277019	77564966
AK6_chr5_69345984_69374520	0/0	g0001	24	1	8	11	2	2	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0002	21	1	5	9	3	3	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0003	15	1	2	12	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0004	13	12	1	0	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0005	13	0	6	5	0	2	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0006	11	0	6	5	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0007	7	1	0	5	1	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0008	7	0	3	0	1	3	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0009	6	4	0	0	2	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0010	6	0	1	5	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0011	6	0	3	2	0	1	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0012	6	6	0	0	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0013	6	0	0	6	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0014	5	0	0	5	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0015	4	2	1	0	0	1	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0016	4	0	0	4	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0017	4	0	1	3	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0018	4	0	0	4	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0019	3	0	2	0	0	1	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0020	3	0	2	0	1	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/1	g0021	3	1	0	0	1	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0022	3	0	0	3	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0023	3	0	0	3	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0024	3	0	2	0	0	1	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0025	3	3	0	0	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0026	3	0	0	3	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0027	3	0	0	3	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0028	3	3	0	0	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0029	3	2	1	0	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0030	3	0	0	3	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0031	3	0	0	3	0	0	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	g0032	2	2	0	0	0	0	AK6	chr5	69345984	69374520