JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALAD_chr9_113381312_113406284	0/0	g0276	1	0	1	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0277	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0278	1	0	1	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0279	1	0	1	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0280	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0281	1	0	1	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0282	1	0	1	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0283	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0284	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0285	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0286	1	0	0	0	1	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0287	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0288	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0289	1	0	0	0	1	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0290	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0291	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0292	1	0	0	0	0	1	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0293	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0294	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0295	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0296	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0297	1	0	1	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0298	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0299	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0300	1	0	0	0	0	1	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0301	1	1	0	0	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0302	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0303	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0304	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0305	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	g0306	1	0	0	1	0	0	ALAD	chr9	113381312	113406284
ALAS1_chr3_52193160_52219327	1/0	g0001	97	7	18	54	5	12	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0002	75	4	19	40	5	7	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0003	13	12	1	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0004	8	0	3	4	1	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0005	7	4	1	0	2	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0006	7	1	2	4	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0007	6	0	6	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0008	6	6	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0009	5	4	1	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0010	5	5	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0011	5	0	0	5	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0012	4	4	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0013	4	0	0	3	0	1	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0014	4	0	3	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0015	3	2	1	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0016	3	0	0	1	0	2	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0017	3	0	0	3	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0018	3	0	2	0	0	1	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0019	3	0	1	0	1	1	ALAS1	chr3	52193160	52219327