JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALAS1_chr3_52193160_52219327	0/0	g0070	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0071	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0072	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0073	1	0	0	0	0	1	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/1	g0074	1	0	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0075	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0076	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0077	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0078	1	0	0	0	0	1	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0079	1	0	0	0	0	1	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0080	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0081	1	0	0	0	1	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0082	1	0	1	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0083	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0084	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0085	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0086	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0087	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0088	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0089	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0090	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0091	1	0	1	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0092	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0093	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0094	1	0	0	1	0	0	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	g0095	1	1	0	0	0	0	ALAS1	chr3	52193160	52219327
ALAS2_chrX_55004055_55035977	1/0	g0001	17	1	4	7	1	3	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0002	16	0	0	13	0	3	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0003	13	0	5	5	0	3	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0004	11	0	5	2	1	3	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0005	11	1	0	9	0	1	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0006	7	2	1	4	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0007	6	0	2	3	0	1	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0008	5	0	0	4	0	1	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0009	5	0	3	2	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0010	5	0	5	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0011	4	0	1	3	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0012	4	4	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0013	4	0	0	4	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0014	4	0	1	1	1	1	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0015	4	0	4	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0016	4	4	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0017	3	0	0	3	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0018	3	0	0	3	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0019	3	3	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0020	3	3	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0021	3	3	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0022	2	0	1	1	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0023	2	0	2	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0024	2	0	0	1	1	0	ALAS2	chrX	55004055	55035977