JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALAS2_chrX_55004055_55035977	0/0	g0125	1	0	0	1	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0126	1	0	0	1	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0127	1	0	1	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0128	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0129	1	0	1	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0130	1	0	0	1	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0131	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0132	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0133	1	0	0	1	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0134	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0135	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0136	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0137	1	0	0	1	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0138	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0139	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0140	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0141	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0142	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0143	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0144	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0145	1	0	0	0	0	1	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0146	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/1	g0147	1	0	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0148	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0149	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0150	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0151	1	1	0	0	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0152	1	0	0	1	0	0	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	g0153	1	0	0	0	0	1	ALAS2	chrX	55004055	55035977
ALB_chr4_73399287_73426482	0/0	g0001	71	3	8	46	3	11	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/1	g0002	50	0	11	32	3	3	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0003	36	1	8	19	2	6	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0004	23	3	2	16	1	1	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0005	15	1	10	4	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0006	12	10	2	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0007	10	9	1	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0008	10	10	0	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0009	9	0	0	9	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0010	8	6	1	0	0	1	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0011	6	0	0	2	1	3	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0012	5	5	0	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0013	4	0	0	4	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0014	4	0	0	4	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	1/0	g0015	4	1	2	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0016	4	4	0	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0017	4	4	0	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0018	3	0	3	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0019	3	0	3	0	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0020	3	0	0	3	0	0	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	g0021	3	0	0	3	0	0	ALB	chr4	73399287	73426482