JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
ALDH16A1_chr19_49448225_49476050	0/0	g0196	1	0	0	0	1	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0197	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0198	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0199	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0200	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0201	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0202	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0203	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0204	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0205	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0206	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0207	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0208	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0209	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0210	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0211	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0212	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0213	1	0	0	0	1	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0214	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0215	1	0	0	0	1	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0216	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0217	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0218	1	0	0	1	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0219	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0220	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0221	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0222	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0223	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0224	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0225	1	0	1	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0226	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0227	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0228	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0229	1	0	0	0	1	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	g0230	1	1	0	0	0	ALDH16A1	chr19	49448225	49476050
ALDH18A1_chr10_95600941_95661711	0/0	g0001	14	0	2	11	1	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0002	7	0	0	6	1	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0003	6	0	0	6	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0004	5	5	0	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0005	4	4	0	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0006	4	0	0	4	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0007	4	1	3	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0008	4	4	0	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0009	4	4	0	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0010	4	0	4	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0011	4	0	2	2	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0012	4	0	0	4	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/1	g0013	3	0	2	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	1/0	g0014	3	2	0	0	0	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	g0015	3	0	0	2	1	ALDH18A1	chr10	95600941	95661711