JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCB9_chr12_122923992_122971463	0/0	g0221	1	0	0	1	0	0	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	g0222	1	0	0	1	0	0	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	g0223	1	0	0	1	0	0	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	g0224	1	0	0	1	0	0	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	g0225	1	0	0	1	0	0	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	g0226	1	1	0	0	0	0	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	g0227	1	0	1	0	0	0	ABCB9	chr12	122923992	122971463
ABCC10_chr6_43422541_43455427	0/1	g0001	25	1	3	12	4	4	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0002	14	1	9	3	0	1	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0003	12	0	4	3	0	5	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	1/0	g0004	10	0	7	0	2	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0005	9	8	1	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0006	7	0	1	4	0	2	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0007	6	0	2	4	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0008	6	0	1	4	0	1	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0009	5	0	4	0	0	1	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0010	5	5	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0011	4	0	0	4	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0012	4	4	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0013	3	0	0	3	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0014	3	2	1	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0015	3	0	0	3	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0016	3	1	0	1	0	1	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0017	3	0	0	3	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0018	3	0	0	3	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0019	3	0	0	3	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0020	2	0	1	0	1	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0021	2	0	2	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0022	2	0	0	2	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0023	2	0	0	2	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0024	2	0	1	0	1	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0025	2	0	2	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0026	2	0	0	2	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0027	2	2	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0028	2	2	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0029	2	2	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0030	2	0	2	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0031	2	0	0	0	0	2	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0032	2	0	2	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0033	2	0	0	0	0	2	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0034	2	2	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0035	1	0	0	1	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0036	1	0	1	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0037	1	0	1	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0038	1	0	0	0	0	1	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0039	1	1	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0040	1	0	1	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0041	1	1	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0042	1	1	0	0	0	0	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	g0043	1	0	1	0	0	0	ABCC10	chr6	43422541	43455427