JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALDH1L2_chr12_105014790_105089458	0/0	g0347	1	0	0	0	0	1	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0348	1	0	1	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0349	1	0	0	0	0	1	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0350	1	0	1	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0351	1	0	0	0	0	1	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0352	1	0	1	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0353	1	0	0	0	0	1	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0354	1	0	0	0	1	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0355	1	0	0	0	1	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0356	1	1	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	1/0	g0357	1	0	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0358	1	1	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0359	1	1	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0360	1	0	1	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0361	1	0	0	0	1	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0362	1	0	0	0	1	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0363	1	0	1	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0364	1	0	1	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0365	1	1	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0366	1	1	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0367	1	0	1	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0368	1	1	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0369	1	1	0	0	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0370	1	0	0	0	0	1	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0371	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0372	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0373	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0374	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0375	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0376	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0377	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0378	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0379	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0380	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0381	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0382	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0383	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	g0384	1	0	0	1	0	0	ALDH1L2	chr12	105014790	105089458
ALDH2_chr12_111761933_111822532	0/0	g0001	19	1	11	3	2	2	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0002	15	3	0	9	0	3	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0003	14	0	0	14	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0004	12	0	1	10	0	1	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0005	5	5	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0006	5	1	4	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0007	4	4	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0008	3	3	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0009	3	2	1	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0010	3	0	1	1	0	1	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0011	3	0	2	0	1	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0012	3	0	1	1	0	1	ALDH2	chr12	111761933	111822532