JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALDH2_chr12_111761933_111822532	0/0	g0213	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0214	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0215	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0216	1	0	0	0	0	1	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0217	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0218	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0219	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0220	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0221	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0222	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0223	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0224	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0225	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0226	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0227	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0228	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0229	1	0	0	0	0	1	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0230	1	0	0	0	0	1	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0231	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0232	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0233	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0234	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0235	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0236	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0237	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0238	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0239	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0240	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0241	1	0	1	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0242	1	1	0	0	0	0	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0243	1	0	0	0	0	1	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	g0244	1	0	0	1	0	0	ALDH2	chr12	111761933	111822532
ALDH3A1_chr17_19732989_19753298	0/0	g0001	47	0	19	19	0	9	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0002	45	2	6	23	3	11	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0003	34	0	3	24	2	5	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0004	25	2	9	8	3	3	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/1	g0005	16	5	5	0	2	3	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	1/0	g0006	13	0	8	0	2	2	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0007	11	0	0	11	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0008	8	4	4	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0009	8	0	2	6	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0010	7	0	0	7	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0011	6	1	3	2	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0012	6	0	2	4	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0013	6	0	0	6	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0014	5	0	0	5	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0015	5	5	0	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0016	5	5	0	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0017	5	5	0	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0018	5	5	0	0	0	0	ALDH3A1	chr17	19732989	19753298