JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ALDH3A1_chr17_19732989_19753298	0/0	g0119	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0120	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0121	1	0	1	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0122	1	0	1	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0123	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0124	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0125	1	1	0	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0126	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0127	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0128	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0129	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0130	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0131	1	1	0	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0132	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0133	1	0	0	0	0	1	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0134	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0135	1	0	1	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0136	1	0	1	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0137	1	0	1	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0138	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0139	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0140	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0141	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0142	1	0	0	1	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	g0143	1	1	0	0	0	0	ALDH3A1	chr17	19732989	19753298
ALDH3A2_chr17_19643751_19682596	0/0	g0001	46	1	11	30	2	2	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0002	43	1	13	20	3	6	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0003	19	0	7	2	1	9	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0004	11	0	0	9	0	2	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0005	10	0	0	9	0	1	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0006	8	0	0	8	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0007	8	0	0	8	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0008	6	6	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0009	6	1	3	0	1	1	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0010	5	5	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0011	5	0	0	2	1	2	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0012	5	0	0	5	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0013	4	4	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0014	4	1	2	0	0	1	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0015	4	0	0	4	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0016	4	3	1	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0017	4	4	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0018	3	0	3	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0019	3	0	2	0	0	1	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0020	3	0	0	3	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0021	3	0	2	0	1	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0022	2	2	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0023	2	1	0	0	1	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0024	2	2	0	0	0	0	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	g0025	2	0	0	2	0	0	ALDH3A2	chr17	19643751	19682596